Detailed information of SNP:
|
SNP ID:
sf1104418029(Gbrowse)
Chromosome: chr11 Position: 4418029 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 97.31% | 2.69% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104418029 | A->T | LOC_Os11g08390(LOC_Os11g08390.1) | Synonymous |