Detailed information of SNP:
|
SNP ID:
sf1104431025(Gbrowse)
Chromosome: chr11 Position: 4431025 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 71.70% | 28.30% |
| All Indica | 799 | 76.60% | 23.40% |
| All Japonica | 495 | 66.67% | 33.33% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 53.87% | 46.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 333 | 54.65% | 45.35% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104431025 | C->A | INTERGENIC | None |