Detailed information of SNP:
|
SNP ID:
sf1104439147(Gbrowse)
Chromosome: chr11 Position: 4439147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1267 | 93.53% | 6.47% |
| All Indica | 727 | 94.91% | 5.09% |
| All Japonica | 428 | 92.06% | 7.94% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 310 | 88.39% | 11.61% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 271 | 88.56% | 11.44% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104439147 | G->A | LOC_Os11g08440(LOC_Os11g08440.1) | Non-Synonymous SNP |