Detailed information of SNP:
|
SNP ID:
sf1104444662(Gbrowse)
Chromosome: chr11 Position: 4444662 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 71.65% | 28.35% |
| All Indica | 799 | 76.47% | 23.53% |
| All Japonica | 496 | 66.13% | 33.87% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 54.67% | 45.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104444662 | G->A | LOC_Os11g08445(LOC_Os11g08445.1) | Non-Synonymous SNP |