Detailed information of SNP:
|
SNP ID:
sf1104444831(Gbrowse)
Chromosome: chr11 Position: 4444831 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 74.48% | 25.52% |
| All Indica | 794 | 76.95% | 23.05% |
| All Japonica | 483 | 71.22% | 28.78% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 372 | 58.06% | 41.94% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 321 | 61.37% | 38.63% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104444831 | G->C | LOC_Os11g08445(LOC_Os11g08445.1) | Non-Synonymous SNP |