Detailed information of SNP:
|
SNP ID:
sf1104444846(Gbrowse)
Chromosome: chr11 Position: 4444846 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 74.57% | 25.43% |
| All Indica | 792 | 76.89% | 23.11% |
| All Japonica | 494 | 71.66% | 28.34% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 370 | 57.57% | 42.43% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 332 | 62.35% | 37.65% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104444846 | C->T | LOC_Os11g08445(LOC_Os11g08445.1) | Synonymous |