Detailed information of SNP:
|
SNP ID:
sf1104452218(Gbrowse)
Chromosome: chr11 Position: 4452218 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 70.31% | 29.69% |
| All Indica | 798 | 76.94% | 23.06% |
| All Japonica | 497 | 61.57% | 38.43% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 374 | 55.35% | 44.65% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104452218 | G->A | INTERGENIC | None |