Detailed information of SNP:
|
SNP ID:
sf1104458908(Gbrowse)
Chromosome: chr11 Position: 4458908 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 71.89% | 28.11% |
| All Indica | 798 | 78.20% | 21.80% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 374 | 58.02% | 41.98% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 51.34% | 48.66% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104458908 | A->G | INTERGENIC | None |