Detailed information of SNP:



SNP ID: sf1104463464(Gbrowse)

Chromosome: chr11

Position: 4463464
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1397 85.76% 14.24%
All Indica785 88.92% 11.08%
All Japonica490 81.02% 18.98%
Aus66 77.27% 22.73%
Indica I363 78.24% 21.76%
Indica II212 99.53% 0.47%
Indica Intermediate210 96.67% 3.33%
Temperate Japonica329 74.47% 25.53%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 86.57% 13.43%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1104463464 A->C LOC_Os11g08460(LOC_Os11g08460.2) Non-Synonymous SNP
sf1104463464 A->C LOC_Os11g08460(LOC_Os11g08460.1) Non-Synonymous SNP