Detailed information of SNP:
|
SNP ID:
sf1104463464(Gbrowse)
Chromosome: chr11 Position: 4463464 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 85.76% | 14.24% |
| All Indica | 785 | 88.92% | 11.08% |
| All Japonica | 490 | 81.02% | 18.98% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 363 | 78.24% | 21.76% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 329 | 74.47% | 25.53% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104463464 | A->C | LOC_Os11g08460(LOC_Os11g08460.2) | Non-Synonymous SNP |
| sf1104463464 | A->C | LOC_Os11g08460(LOC_Os11g08460.1) | Non-Synonymous SNP |