Detailed information of SNP:
|
SNP ID:
sf1104464936(Gbrowse)
Chromosome: chr11 Position: 4464936 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.95% | 46.05% |
| All Indica | 798 | 26.57% | 73.43% |
| All Japonica | 496 | 95.97% | 4.03% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 212 | 6.13% | 93.87% |
| Indica Intermediate | 211 | 12.32% | 87.68% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104464936 | T->C | LOC_Os11g08460(LOC_Os11g08460.1) | INTRON |