Detailed information of SNP:



SNP ID: sf1104509664(Gbrowse)

Chromosome: chr11

Position: 4509664
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1368 93.49% 6.51%
All Indica770 93.64% 6.36%
All Japonica481 96.26% 3.74%
Aus63 66.67% 33.33%
Indica I358 93.58% 6.42%
Indica II208 95.67% 4.33%
Indica Intermediate204 91.67% 8.33%
Temperate Japonica321 94.70% 5.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate66 98.48% 1.52%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1104509664 G->A INTERGENIC None