Detailed information of SNP:
|
SNP ID:
sf1104509664(Gbrowse)
Chromosome: chr11 Position: 4509664 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 93.49% | 6.51% |
| All Indica | 770 | 93.64% | 6.36% |
| All Japonica | 481 | 96.26% | 3.74% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 358 | 93.58% | 6.42% |
| Indica II | 208 | 95.67% | 4.33% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 321 | 94.70% | 5.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104509664 | G->A | INTERGENIC | None |