Detailed information of SNP:
|
SNP ID:
sf1104522202(Gbrowse)
Chromosome: chr11 Position: 4522202 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 57.02% | 42.98% |
| All Indica | 790 | 30.76% | 69.24% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 49.73% | 50.27% |
| Indica II | 210 | 11.90% | 88.10% |
| Indica Intermediate | 206 | 15.53% | 84.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104522202 | C->T | LOC_Os11g08569(LOC_Os11g08569.1) | INTRON |