Detailed information of SNP:
|
SNP ID:
sf1104531352(Gbrowse)
Chromosome: chr11 Position: 4531352 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 93.88% | 6.12% |
| All Indica | 749 | 91.32% | 8.68% |
| All Japonica | 490 | 99.80% | 0.20% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 344 | 90.12% | 9.88% |
| Indica II | 207 | 93.72% | 6.28% |
| Indica Intermediate | 198 | 90.91% | 9.09% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104531352 | C->T | LOC_Os11g08569(LOC_Os11g08569.1) | INTRON |