Detailed information of SNP:
|
SNP ID:
sf1104577284(Gbrowse)
Chromosome: chr11 Position: 4577284 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 74.22% | 25.78% |
| All Japonica | 496 | 38.71% | 61.29% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 334 | 52.69% | 47.31% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104577284 | A->G | LOC_Os11g08610(LOC_Os11g08610.1) | Non-Synonymous SNP |