Detailed information of SNP:
|
SNP ID:
sf1104581122(Gbrowse)
Chromosome: chr11 Position: 4581122 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1339 | 67.29% | 32.71% |
| All Indica | 733 | 46.93% | 53.07% |
| All Japonica | 491 | 98.37% | 1.63% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 336 | 40.77% | 59.23% |
| Indica II | 201 | 73.63% | 26.37% |
| Indica Intermediate | 196 | 30.10% | 69.90% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104581122 | T->C | INTERGENIC | None |