Detailed information of SNP:
|
SNP ID:
sf1104587152(Gbrowse)
Chromosome: chr11 Position: 4587152 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 77.37% | 22.63% |
| All Indica | 755 | 85.56% | 14.44% |
| All Japonica | 477 | 64.99% | 35.01% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 334 | 70.36% | 29.64% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 318 | 51.26% | 48.74% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 83.08% | 16.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104587152 | T->G | INTERGENIC | None |