Detailed information of SNP:
|
SNP ID:
sf1104592299(Gbrowse)
Chromosome: chr11 Position: 4592299 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 63.04% | 36.96% |
| All Indica | 791 | 67.13% | 32.87% |
| All Japonica | 495 | 57.58% | 42.42% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 368 | 49.18% | 50.82% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 333 | 45.35% | 54.65% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104592299 | C->T | INTERGENIC | None |