Detailed information of SNP:
|
SNP ID:
sf1104592586(Gbrowse)
Chromosome: chr11 Position: 4592586 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 96.04% | 3.96% |
| All Indica | 771 | 95.07% | 4.93% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 351 | 93.73% | 6.27% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104592586 | T->C | INTERGENIC | None |