Detailed information of SNP:
|
SNP ID:
sf1104597445(Gbrowse)
Chromosome: chr11 Position: 4597445 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.78% | 49.22% |
| All Indica | 796 | 41.83% | 58.17% |
| All Japonica | 497 | 65.19% | 34.81% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 16.00% | 84.00% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 210 | 48.10% | 51.90% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104597445 | A->G | INTERGENIC | None |