Detailed information of SNP:
|
SNP ID:
sf1104697836(Gbrowse)
Chromosome: chr11 Position: 4697836 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 53.86% | 46.14% |
| All Indica | 794 | 43.83% | 56.17% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 40.32% | 59.68% |
| Indica II | 211 | 29.38% | 70.62% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 71.34% | 28.66% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104697836 | T->C | LOC_Os11g08870(LOC_Os11g08870.1) | Synonymous |