Detailed information of SNP:
|
SNP ID:
sf1104725105(Gbrowse)
Chromosome: chr11 Position: 4725105 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 53.49% | 46.51% |
| All Indica | 798 | 73.56% | 26.44% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 25.35% | 74.65% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 28.66% | 71.34% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104725105 | T->C | INTERGENIC | None |