Detailed information of SNP:
|
SNP ID:
sf1104725759(Gbrowse)
Chromosome: chr11 Position: 4725759 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.23% | 16.77% |
| All Indica | 799 | 76.22% | 23.78% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 29.58% | 70.42% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104725759 | G->A | INTERGENIC | None |