Detailed information of SNP:
|
SNP ID:
sf1104735779(Gbrowse)
Chromosome: chr11 Position: 4735779 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 86.67% | 13.33% |
| All Indica | 795 | 77.99% | 22.01% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 372 | 54.84% | 45.16% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104735779 | G->T | INTERGENIC | None |