Detailed information of SNP:
|
SNP ID:
sf1104736460(Gbrowse)
Chromosome: chr11 Position: 4736460 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 77.20% | 22.80% |
| All Indica | 794 | 75.31% | 24.69% |
| All Japonica | 491 | 85.34% | 14.66% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 372 | 53.23% | 46.77% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 332 | 80.12% | 19.88% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104736460 | C->A | INTERGENIC | None |