Detailed information of SNP:
|
SNP ID:
sf1104742660(Gbrowse)
Chromosome: chr11 Position: 4742660 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.08% | 29.92% |
| All Indica | 797 | 74.28% | 25.72% |
| All Japonica | 497 | 70.02% | 29.98% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 52.00% | 48.00% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104742660 | C->A | INTERGENIC | None |