Detailed information of SNP:
|
SNP ID:
sf1104748049(Gbrowse)
Chromosome: chr11 Position: 4748049 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 89.23% | 10.77% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 490 | 82.24% | 17.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 330 | 80.91% | 19.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104748049 | G->A | INTERGENIC | None |