Detailed information of SNP:
|
SNP ID:
sf1104750321(Gbrowse)
Chromosome: chr11 Position: 4750321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1178 | 91.85% | 8.15% |
| All Indica | 592 | 83.95% | 16.05% |
| All Japonica | 485 | 100.00% | 0.00% |
| Aus | 53 | 100.00% | 0.00% |
| Indica I | 294 | 85.71% | 14.29% |
| Indica II | 143 | 88.11% | 11.89% |
| Indica Intermediate | 155 | 76.77% | 23.23% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104750321 | C->T | INTERGENIC | None |