Detailed information of SNP:
|
SNP ID:
sf1104752786(Gbrowse)
Chromosome: chr11 Position: 4752786 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 88.39% | 11.61% |
| All Indica | 797 | 92.47% | 7.53% |
| All Japonica | 492 | 79.67% | 20.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 332 | 78.31% | 21.69% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104752786 | A->G | LOC_Os11g08959(LOC_Os11g08959.1) | INTRON |