Detailed information of SNP:
|
SNP ID:
sf1104762609(Gbrowse)
Chromosome: chr11 Position: 4762609 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 91.79% | 8.21% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 492 | 89.43% | 10.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 332 | 89.46% | 10.54% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104762609 | G->T | LOC_Os11g08980(LOC_Os11g08980.1) | INTRON |