Detailed information of SNP:
|
SNP ID:
sf1104782978(Gbrowse)
Chromosome: chr11 Position: 4782978 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 65.83% | 34.17% |
| All Indica | 736 | 44.29% | 55.71% |
| All Japonica | 496 | 96.57% | 3.43% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 341 | 61.29% | 38.71% |
| Indica II | 198 | 19.19% | 80.81% |
| Indica Intermediate | 197 | 40.10% | 59.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104782978 | T->A | LOC_Os11g09010(LOC_Os11g09010.1) | INTRON |
| sf1104782978 | T->A | LOC_Os11g09010(LOC_Os11g09010.3) | INTRON |
| sf1104782978 | T->A | LOC_Os11g09010(LOC_Os11g09010.2) | INTRON |