Detailed information of SNP:
|
SNP ID:
sf1104790313(Gbrowse)
Chromosome: chr11 Position: 4790313 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1285 | 96.11% | 3.89% |
| All Indica | 677 | 93.65% | 6.35% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 329 | 96.35% | 3.65% |
| Indica II | 164 | 90.85% | 9.15% |
| Indica Intermediate | 184 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104790313 | G->T | INTERGENIC | None |