Detailed information of SNP:
|
SNP ID:
sf1104803539(Gbrowse)
Chromosome: chr11 Position: 4803539 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 83.86% | 16.14% |
| All Indica | 799 | 77.85% | 22.15% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104803539 | C->G | LOC_Os11g09040(LOC_Os11g09040.1) | UTR_3_PRIME |