Detailed information of SNP:
|
SNP ID:
sf1104835391(Gbrowse)
Chromosome: chr11 Position: 4835391 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.93% | 6.07% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104835391 | G->A | INTERGENIC | None |