Detailed information of SNP:
|
SNP ID:
sf1104905741(Gbrowse)
Chromosome: chr11 Position: 4905741 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.54% | 19.46% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 496 | 54.64% | 45.36% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104905741 | G->A | INTERGENIC | None |