Detailed information of SNP:
|
SNP ID:
sf1104921409(Gbrowse)
Chromosome: chr11 Position: 4921409 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.69% | 31.31% |
| All Indica | 798 | 82.08% | 17.92% |
| All Japonica | 497 | 43.86% | 56.14% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 43.28% | 56.72% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104921409 | A->T | LOC_Os11g09180(LOC_Os11g09180.2) | SNPs that introduce initiation codons |
| sf1104921409 | A->T | LOC_Os11g09180(LOC_Os11g09180.1) | SNPs that introduce initiation codons |