Detailed information of SNP:
|
SNP ID:
sf1104923593(Gbrowse)
Chromosome: chr11 Position: 4923593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 72.69% | 27.31% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 487 | 36.34% | 63.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 330 | 35.15% | 64.85% |
| Tropical Japonica | 89 | 28.09% | 71.91% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104923593 | G->A | INTERGENIC | None |