Detailed information of SNP:
|
SNP ID:
sf1104925811(Gbrowse)
Chromosome: chr11 Position: 4925811 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.31% | 42.69% |
| All Indica | 796 | 32.29% | 67.71% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 372 | 48.39% | 51.61% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104925811 | T->C | INTERGENIC | None |