Detailed information of SNP:
|
SNP ID:
sf1104934245(Gbrowse)
Chromosome: chr11 Position: 4934245 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 57.51% | 42.49% |
| All Indica | 794 | 32.62% | 67.38% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 65 | 73.85% | 26.15% |
| Indica I | 370 | 50.27% | 49.73% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104934245 | A->G | INTERGENIC | None |