Detailed information of SNP:
|
SNP ID:
sf1104943248(Gbrowse)
Chromosome: chr11 Position: 4943248 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.00% | 26.00% |
| All Indica | 799 | 87.23% | 12.77% |
| All Japonica | 497 | 50.30% | 49.70% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 51.04% | 48.96% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104943248 | G->C | LOC_Os11g09230(LOC_Os11g09230.1) | Synonymous |