Detailed information of SNP:
|
SNP ID:
sf1104959194(Gbrowse)
Chromosome: chr11 Position: 4959194 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.82% | 39.18% |
| All Indica | 799 | 37.67% | 62.33% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 211 | 34.12% | 65.88% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104959194 | A->G | INTERGENIC | None |