Detailed information of SNP:
|
SNP ID:
sf1104961891(Gbrowse)
Chromosome: chr11 Position: 4961891 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 59.05% | 40.95% |
| All Indica | 796 | 35.80% | 64.20% |
| All Japonica | 491 | 93.28% | 6.72% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 54.81% | 45.19% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 209 | 31.10% | 68.90% |
| Temperate Japonica | 330 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104961891 | T->C | LOC_Os11g09260(LOC_Os11g09260.1) | UTR_5_PRIME |