Detailed information of SNP:
|
SNP ID:
sf1104962033(Gbrowse)
Chromosome: chr11 Position: 4962033 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.03% | 39.97% |
| All Indica | 798 | 36.59% | 63.41% |
| All Japonica | 495 | 94.55% | 5.45% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 212 | 7.08% | 92.92% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104962033 | A->G | LOC_Os11g09260(LOC_Os11g09260.1) | UTR_5_PRIME |