Detailed information of SNP:
|
SNP ID:
sf1104974560(Gbrowse)
Chromosome: chr11 Position: 4974560 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 56.53% | 43.47% |
| All Indica | 791 | 34.89% | 65.11% |
| All Japonica | 489 | 88.96% | 11.04% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 371 | 53.10% | 46.90% |
| Indica II | 212 | 6.13% | 93.87% |
| Indica Intermediate | 208 | 31.73% | 68.27% |
| Temperate Japonica | 331 | 93.66% | 6.34% |
| Tropical Japonica | 90 | 71.11% | 28.89% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104974560 | A->G | LOC_Os11g09290(LOC_Os11g09290.1) | Synonymous |