Detailed information of SNP:
|
SNP ID:
sf1104974692(Gbrowse)
Chromosome: chr11 Position: 4974692 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.51% | 38.49% |
| All Indica | 786 | 40.20% | 59.80% |
| All Japonica | 494 | 92.71% | 7.29% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 372 | 58.33% | 41.67% |
| Indica II | 210 | 9.52% | 90.48% |
| Indica Intermediate | 204 | 38.73% | 61.27% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104974692 | G->A | LOC_Os11g09290(LOC_Os11g09290.1) | Synonymous |