Detailed information of SNP:
|
SNP ID:
sf1104974803(Gbrowse)
Chromosome: chr11 Position: 4974803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 56.98% | 43.02% |
| All Indica | 796 | 34.92% | 65.08% |
| All Japonica | 492 | 89.84% | 10.16% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 54.16% | 45.84% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 210 | 28.57% | 71.43% |
| Temperate Japonica | 332 | 95.78% | 4.22% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104974803 | C->T | LOC_Os11g09290(LOC_Os11g09290.1) | INTRON |