Detailed information of SNP:
|
SNP ID:
sf1104974882(Gbrowse)
Chromosome: chr11 Position: 4974882 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.55% | 43.45% |
| All Indica | 797 | 34.25% | 65.75% |
| All Japonica | 493 | 89.86% | 10.14% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 52.94% | 47.06% |
| Indica II | 212 | 7.55% | 92.45% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 92 | 70.65% | 29.35% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104974882 | G->A | LOC_Os11g09290(LOC_Os11g09290.1) | INTRON |