Detailed information of SNP:
|
SNP ID:
sf1104975426(Gbrowse)
Chromosome: chr11 Position: 4975426 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 55.85% | 44.15% |
| All Indica | 793 | 33.17% | 66.83% |
| All Japonica | 495 | 89.09% | 10.91% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 371 | 52.29% | 47.71% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 209 | 26.32% | 73.68% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104975426 | T->C | INTERGENIC | None |