Detailed information of SNP:
|
SNP ID:
sf1104975461(Gbrowse)
Chromosome: chr11 Position: 4975461 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 56.93% | 43.07% |
| All Indica | 794 | 34.38% | 65.62% |
| All Japonica | 491 | 90.43% | 9.57% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 370 | 53.24% | 46.76% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 28.44% | 71.56% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104975461 | C->A | INTERGENIC | None |