Detailed information of SNP:
|
SNP ID:
sf1104983203(Gbrowse)
Chromosome: chr11 Position: 4983203 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 54.45% | 45.55% |
| All Indica | 795 | 34.47% | 65.53% |
| All Japonica | 487 | 83.57% | 16.43% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 52.80% | 47.20% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 207 | 29.95% | 70.05% |
| Temperate Japonica | 328 | 85.06% | 14.94% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104983203 | A->G | LOC_Os11g09300(LOC_Os11g09300.1) | INTRON |