Detailed information of SNP:
|
SNP ID:
sf1104983308(Gbrowse)
Chromosome: chr11 Position: 4983308 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 56.52% | 43.48% |
| All Indica | 794 | 35.39% | 64.61% |
| All Japonica | 494 | 86.64% | 13.36% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 372 | 54.84% | 45.16% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 209 | 30.62% | 69.38% |
| Temperate Japonica | 333 | 88.89% | 11.11% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1104983308 | T->C | LOC_Os11g09300(LOC_Os11g09300.1) | INTRON |